HL_6HHQ_235
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HHQ_235 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.0611
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HHQ|1|AS|U|32
6HHQ|1|AS|U|33
6HHQ|1|AS|C|34
6HHQ|1|AS|C|35
6HHQ|1|AS|C|36
6HHQ|1|AS|G|37
6HHQ|1|AS|U|38
6HHQ|1|AS|C|39
6HHQ|1|AS|C|40
6HHQ|1|AS|G|41
6HHQ|1|AS|A|42
6HHQ|1|AS|U|43
6HHQ|1|AS|C|44
6HHQ|1|AS|A|45
Current chains
- Chain AS
- 5S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CG
- 60S ribosomal protein L5
- Chain CM
- 60S ribosomal protein L11-B
- Chain sM
- Suppressor protein STM1
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