HL_6HHQ_238

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGAGAAGGGGGCAACUCCAUCUCAG

Length

26 nucleotides

Bulged bases

6HHQ|1|sR|C|1700, 6HHQ|1|sR|A|1701, 6HHQ|1|sR|A|1702, 6HHQ|1|sR|U|1704

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|sR|U|1688
6HHQ|1|sR|A|1689
6HHQ|1|sR|G|1690
6HHQ|1|sR|A|1691
6HHQ|1|sR|G|1692
6HHQ|1|sR|A|1693
6HHQ|1|sR|A|1694
6HHQ|1|sR|G|1695
6HHQ|1|sR|G|1696
6HHQ|1|sR|G|1697
6HHQ|1|sR|G|1698
6HHQ|1|sR|G|1699
6HHQ|1|sR|C|1700
6HHQ|1|sR|A|1701
6HHQ|1|sR|A|1702
6HHQ|1|sR|C|1703
6HHQ|1|sR|U|1704
6HHQ|1|sR|C|1705
6HHQ|1|sR|C|1706
6HHQ|1|sR|A|1707
6HHQ|1|sR|U|1708
6HHQ|1|sR|C|1709
6HHQ|1|sR|U|1710
6HHQ|1|sR|C|1711
6HHQ|1|sR|A|1712
6HHQ|1|sR|G|1713

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A