HL_6I1L_001

3D structure

PDB id

6I1L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of FnCas12a in complex with a crRNA guide and ssDNA target

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

CUGUUG

Length

6 nucleotides

Bulged bases

6I1L|1|B|G|-8, 6I1L|1|B|U|-7, 6I1L|1|B|U|-6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I1L_001 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.0572

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6I1L|1|B|C|-10
6I1L|1|B|U|-9
6I1L|1|B|G|-8
6I1L|1|B|U|-7
6I1L|1|B|U|-6
6I1L|1|B|G|-5

Current chains

Chain B

crRNA (40-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas12a

Chain D

CRISPR-associated endonuclease Cas12a