3D structure

PDB id
6I7V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosomal protein paralogs bL31 and bL36
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUGGAAAG
Length
8 nucleotides
Bulged bases
6I7V|1|CA|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6I7V_071 not in the Motif Atlas
Homologous match to HL_5J7L_142
Geometric discrepancy: 0.1586
The information below is about HL_5J7L_142
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

6I7V|1|CA|C|305
6I7V|1|CA|U|306
6I7V|1|CA|G|307
6I7V|1|CA|G|308
6I7V|1|CA|A|309
6I7V|1|CA|A|310
6I7V|1|CA|A|311
6I7V|1|CA|G|312

Current chains

Chain CA
23S ribsomal RNA

Nearby chains

Chain CV
50S ribosomal protein L24

Coloring options:


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