HL_6I7V_072

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6I7V|1|CA|G|329, 6I7V|1|CA|A|330, 6I7V|1|CA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_072 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.3084

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6I7V|1|CA|G|327
6I7V|1|CA|U|328
6I7V|1|CA|G|329
6I7V|1|CA|A|330
6I7V|1|CA|C|331
6I7V|1|CA|A|332
6I7V|1|CA|G|333
6I7V|1|CA|C|334
6I7V|1|CA|C|335

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CV

50S ribosomal protein L24