3D structure

PDB id
6I7V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosomal protein paralogs bL31 and bL36
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GCAAAUC
Length
7 nucleotides
Bulged bases
6I7V|1|DA|C|1493, 6I7V|1|DA|U|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6I7V_169 not in the Motif Atlas
Homologous match to HL_5J7L_170
Geometric discrepancy: 0.118
The information below is about HL_5J7L_170
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_57176.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

6I7V|1|DA|G|1492
6I7V|1|DA|C|1493
6I7V|1|DA|A|1494
6I7V|1|DA|A|1495
6I7V|1|DA|A|1496
6I7V|1|DA|U|1497
6I7V|1|DA|C|1498

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain DC
50S ribosomal protein L2

Coloring options:


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