HL_6I7V_225

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

6I7V|1|CA|A|1453, 6I7V|1|CA|C|1454, 6I7V|1|CA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_225 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.377

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6I7V|1|CA|G|1450
6I7V|1|CA|C|1451
6I7V|1|CA|G|1452
6I7V|1|CA|A|1453
6I7V|1|CA|C|1454
6I7V|1|CA|G|1455
6I7V|1|CA|G|1456
6I7V|1|CA|U|1457
6I7V|1|CA|U|1458
6I7V|1|CA|G|1459
6I7V|1|CA|U|1460
6I7V|1|CA|C|1461

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain CO

50S ribosomal protein L17