HL_6I9R_033

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

6I9R|1|A|G|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I9R_033 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1898

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6I9R|1|A|U|3015
6I9R|1|A|G|3016
6I9R|1|A|C|3017
6I9R|1|A|A|3018
6I9R|1|A|G|3019
6I9R|1|A|C|3020
6I9R|1|A|C|3021
6I9R|1|A|G|3022

Current chains

Chain A

16S rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial