HL_6ID0_005

3D structure

PDB id

6ID0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

6ID0|1|H|C|164, 6ID0|1|H|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ID0|1|H|G|158
6ID0|1|H|U|159
6ID0|1|H|A|160
6ID0|1|H|U|161
6ID0|1|H|U|162
6ID0|1|H|G|163
6ID0|1|H|C|164
6ID0|1|H|A|165
6ID0|1|H|G|166
6ID0|1|H|U|167
6ID0|1|H|A|168
6ID0|1|H|C|169
6ID0|1|H|C|170
6ID0|1|H|U|171
6ID0|1|H|C|172

Current chains

Chain H

U2snRNA

Nearby chains

Chain n

Small nuclear ribonucleoprotein G

Chain o

U2 small nuclear ribonucleoprotein A'

Chain p

U2 small nuclear ribonucleoprotein B''