HL_6JDV_002
3D structure
- PDB id
- 6JDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_85603.1
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 304
Unit IDs
6JDV|1|B|U|86
6JDV|1|B|G|87
6JDV|1|B|A|88
6JDV|1|B|A|89
6JDV|1|B|A|90
6JDV|1|B|A|91
Current chains
- Chain B
- sgRNA
Nearby chains
No other chains within 10ÅColoring options: