HL_6JE3_002

3D structure

PDB id

6JE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang

Experimental method

X-RAY DIFFRACTION

Resolution

2.93 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6JE3_002 not in the Motif Atlas

Geometric match to HL_6UFH_002

Geometric discrepancy: 0.2891

The information below is about HL_6UFH_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6JE3|1|B|U|74
6JE3|1|B|G|75
6JE3|1|B|A|76
6JE3|1|B|A|77
6JE3|1|B|A|78
6JE3|1|B|A|79

Current chains

Chain B

sgRNA

Nearby chains