HL_6JOO_002
3D structure
- PDB id
- 6JOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Corynebacterium diphtheriae Cas9 in complex with sgRNA and target DNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCG
- Length
- 4 nucleotides
- Bulged bases
- 6JOO|1|B|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38927.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 34
Unit IDs
6JOO|1|B|C|58
6JOO|1|B|U|59
6JOO|1|B|C|60
6JOO|1|B|G|61
Current chains
- Chain B
- Guide RNA
Nearby chains
- Chain A
- CRISPR-associated protein,CRISPR-associated endonuclease Cas9
Coloring options: