3D structure

PDB id
6JOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Corynebacterium diphtheriae Cas9 in complex with sgRNA and target DNA
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUCG
Length
4 nucleotides
Bulged bases
6JOO|1|B|U|59
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11871.1
Basepair signature
cWW-F
Number of instances in this motif group
29

Unit IDs

6JOO|1|B|C|58
6JOO|1|B|U|59
6JOO|1|B|C|60
6JOO|1|B|G|61

Current chains

Chain B
Guide RNA

Nearby chains

Chain A
CRISPR-associated protein,CRISPR-associated endonuclease Cas9

Coloring options:

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