HL_6KE6_010

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAAACACC

Length

10 nucleotides

Bulged bases

6KE6|1|5A|C|430, 6KE6|1|5A|C|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6KE6_010 not in the Motif Atlas

Geometric match to HL_8C3A_221

Geometric discrepancy: 0.3075

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6KE6|1|5A|G|424
6KE6|1|5A|U|425
6KE6|1|5A|G|426
6KE6|1|5A|A|427
6KE6|1|5A|A|428
6KE6|1|5A|A|429
6KE6|1|5A|C|430
6KE6|1|5A|A|431
6KE6|1|5A|C|432
6KE6|1|5A|C|433

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 3C

rRNA 2'-O-methyltransferase fibrillarin

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5J

rRNA-processing protein FCF2