HL_6KE6_013

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6KE6|1|SA|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6KE6_013 not in the Motif Atlas

Geometric match to HL_4QK9_001

Geometric discrepancy: 0.327

The information below is about HL_4QK9_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6KE6|1|SA|G|154
6KE6|1|SA|U|155
6KE6|1|SA|A|156
6KE6|1|SA|A|157
6KE6|1|SA|U|158
6KE6|1|SA|U|159
6KE6|1|SA|C|160

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RL

RNA cytidine acetyltransferase

Chain SH

40S ribosomal protein S6-A