HL_6KE6_018

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAUAAGGGUUCGAUUC

Length

18 nucleotides

Bulged bases

6KE6|1|SA|G|371, 6KE6|1|SA|G|372, 6KE6|1|SA|G|373, 6KE6|1|SA|U|374, 6KE6|1|SA|U|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6KE6|1|SA|G|364
6KE6|1|SA|G|365
6KE6|1|SA|A|366
6KE6|1|SA|A|367
6KE6|1|SA|U|368
6KE6|1|SA|A|369
6KE6|1|SA|A|370
6KE6|1|SA|G|371
6KE6|1|SA|G|372
6KE6|1|SA|G|373
6KE6|1|SA|U|374
6KE6|1|SA|U|375
6KE6|1|SA|C|376
6KE6|1|SA|G|377
6KE6|1|SA|A|378
6KE6|1|SA|U|379
6KE6|1|SA|U|380
6KE6|1|SA|C|381

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SF

40S ribosomal protein S4-A

Chain SK

40S ribosomal protein S9-A