HL_6KE6_020

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6KE6|1|SA|A|452, 6KE6|1|SA|U|454, 6KE6|1|SA|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6KE6_020 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1831

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6KE6|1|SA|U|450
6KE6|1|SA|A|451
6KE6|1|SA|A|452
6KE6|1|SA|U|453
6KE6|1|SA|U|454
6KE6|1|SA|C|455
6KE6|1|SA|A|456

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A