HL_6KE6_036

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6KE6_036 not in the Motif Atlas

Geometric match to HL_8C3A_048

Geometric discrepancy: 0.2291

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6KE6|1|SA|G|1698
6KE6|1|SA|G|1699
6KE6|1|SA|C|1700
6KE6|1|SA|A|1701
6KE6|1|SA|A|1702
6KE6|1|SA|C|1703

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RE

U3 small nucleolar RNA-associated protein 22