HL_6KYV_002

3D structure

PDB id

6KYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of RIG-I and hairpin RNA with G-U wobble base pairs

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6KYV|1|C|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6KYV_002 not in the Motif Atlas

Geometric match to HL_6DLR_002

Geometric discrepancy: 0.1081

The information below is about HL_6DLR_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

6KYV|1|C|C|9
6KYV|1|C|U|10
6KYV|1|C|U|11
6KYV|1|C|C|12
6KYV|1|C|G|13
6KYV|1|C|G|14

Current chains

Chain C

RNA (5'-R(*GP*GP*UP*AP*GP*AP*CP*GP*CP*UP*UP*CP*GP*GP*CP*GP*UP*UP*UP*GP*CP*C)-3')

Nearby chains

Chain D

Probable ATP-dependent RNA helicase DDX58