HL_6LAX_003
3D structure
- PDB id
- 6LAX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- the mutant SAM-VI riboswitch (U6C) bound to SAM
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUUGCACUCCG
- Length
- 12 nucleotides
- Bulged bases
- 6LAX|1|B|C|20, 6LAX|1|B|U|23, 6LAX|1|B|C|24, 6LAX|1|B|C|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LAX_003 not in the Motif Atlas
- Geometric match to HL_6LAX_001
- Geometric discrepancy: 0.1071
- The information below is about HL_6LAX_001
- Detailed Annotation
- U1 small nuclear ribonucleoprotein A binding hairpin
- Broad Annotation
- No text annotation
- Motif group
- HL_36992.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
6LAX|1|B|C|15
6LAX|1|B|A|16
6LAX|1|B|U|17
6LAX|1|B|U|18
6LAX|1|B|G|19
6LAX|1|B|C|20
6LAX|1|B|A|21
6LAX|1|B|C|22
6LAX|1|B|U|23
6LAX|1|B|C|24
6LAX|1|B|C|25
6LAX|1|B|G|26
Current chains
- Chain B
- RNA (55-MER)
Nearby chains
- Chain A
- SAM-VI (S-adenosyl methionine) riboswitch aptamer
- Chain C
- U1 small nuclear ribonucleoprotein A
- Chain D
- U1 small nuclear ribonucleoprotein A
Coloring options: