HL_6LAX_004

3D structure

PDB id

6LAX (explore in PDB, NAKB, or RNA 3D Hub)

Description

the mutant SAM-VI riboswitch (U6C) bound to SAM

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LAX_004 not in the Motif Atlas

Geometric match to HL_6LAX_002

Geometric discrepancy: 0.2082

The information below is about HL_6LAX_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6LAX|1|B|U|42
6LAX|1|B|G|43
6LAX|1|B|A|44
6LAX|1|B|A|45
6LAX|1|B|A|46
6LAX|1|B|A|47

Current chains

Chain B

RNA (55-MER)

Nearby chains