HL_6LAZ_002

3D structure

PDB id

6LAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1

Experimental method

X-RAY DIFFRACTION

Resolution

2.76 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LAZ_002 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2046

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6LAZ|1|A|U|42
6LAZ|1|A|G|43
6LAZ|1|A|A|44
6LAZ|1|A|A|45
6LAZ|1|A|A|46
6LAZ|1|A|A|47

Current chains

Chain A

RNA (55-MER)

Nearby chains

Chain B

SAM-VI (S-adenosyl methionine) riboswitch aptamer

Chain D

U1 small nuclear ribonucleoprotein A