HL_6LNB_001

3D structure

PDB id

6LNB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Cascade-TniQ-dsDNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGAGUAG

Length

7 nucleotides

Bulged bases

6LNB|1|M|U|54

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LNB_001 not in the Motif Atlas

Geometric match to HL_4V9F_045

Geometric discrepancy: 0.2199

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6LNB|1|M|C|50
6LNB|1|M|G|51
6LNB|1|M|A|52
6LNB|1|M|G|53
6LNB|1|M|U|54
6LNB|1|M|A|55
6LNB|1|M|G|56

Current chains

Chain M

CRISPR RNA (60-MER)

Nearby chains

Chain A

CRISPR-associated protein Cas6