HL_6LQM_004

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6LQM|1|2|G|134, 6LQM|1|2|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_004 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2866

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6LQM|1|2|C|131
6LQM|1|2|G|132
6LQM|1|2|C|133
6LQM|1|2|G|134
6LQM|1|2|G|135
6LQM|1|2|C|136
6LQM|1|2|G|137

Current chains

Chain 2

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L35

Chain M

60S ribosomal protein L37

Chain U

60S ribosomal protein L15

Chain g

60S ribosomal protein L23a