HL_6LQM_017
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- C(OMG)UCUUG(1MA)AAC(A2M)CG
- Length
- 14 nucleotides
- Bulged bases
- 6LQM|1|2|C|1325
- QA status
- Modified nucleotides: OMG, 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQM_017 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1258
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6LQM|1|2|C|1315
6LQM|1|2|OMG|1316
6LQM|1|2|U|1317
6LQM|1|2|C|1318
6LQM|1|2|U|1319
6LQM|1|2|U|1320
6LQM|1|2|G|1321
6LQM|1|2|1MA|1322
6LQM|1|2|A|1323
6LQM|1|2|A|1324
6LQM|1|2|C|1325
6LQM|1|2|A2M|1326
6LQM|1|2|C|1327
6LQM|1|2|G|1328
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain D
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L27a
- Chain t
- 60S ribosomal protein L32
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