HL_6LQM_019

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_019 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0644

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6LQM|1|2|U|1389
6LQM|1|2|G|1390
6LQM|1|2|A|1391
6LQM|1|2|A|1392
6LQM|1|2|G|1393
6LQM|1|2|G|1394

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18