HL_6LQM_021

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

6LQM|1|2|C|1437, 6LQM|1|2|U|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|C|1436
6LQM|1|2|C|1437
6LQM|1|2|U|1438
6LQM|1|2|C|1439
6LQM|1|2|U|1440
6LQM|1|2|C|1441
6LQM|1|2|C|1442
6LQM|1|2|A|1443
6LQM|1|2|G|1444
6LQM|1|2|U|1445
6LQM|1|2|C|1446
6LQM|1|2|C|1447
6LQM|1|2|G|1448

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain w

60S ribosomal protein L7