HL_6LQM_023

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_023 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.2302

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6LQM|1|2|G|1561
6LQM|1|2|G|1562
6LQM|1|2|A|1563
6LQM|1|2|A|1564
6LQM|1|2|A|1565
6LQM|1|2|C|1566

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a