HL_6LQM_028

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GG(UR3)AAGC

Length

7 nucleotides

Bulged bases

6LQM|1|2|G|1869

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_028 not in the Motif Atlas

Geometric match to HL_4V9F_028

Geometric discrepancy: 0.0911

The information below is about HL_4V9F_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6LQM|1|2|G|1864
6LQM|1|2|G|1865
6LQM|1|2|UR3|1866
6LQM|1|2|A|1867
6LQM|1|2|A|1868
6LQM|1|2|G|1869
6LQM|1|2|C|1870

Current chains

Chain 2

28S rRNA

Nearby chains