HL_6LQM_030

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UAUAGACAGCCCGAA

Length

15 nucleotides

Bulged bases

6LQM|1|2|A|1960

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|U|1957
6LQM|1|2|A|1958
6LQM|1|2|U|1959
6LQM|1|2|A|1960
6LQM|1|2|G|1961
6LQM|1|2|A|1962
6LQM|1|2|C|1963
6LQM|1|2|A|1964
6LQM|1|2|G|1965
6LQM|1|2|C|1966
6LQM|1|2|C|2022
6LQM|1|2|C|2023
6LQM|1|2|G|2024
6LQM|1|2|A|2025
6LQM|1|2|A|2026

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Ubiquitin-60S ribosomal protein L40