HL_6LQM_031
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGCGGCCCGGAGCCCCGCGGACGCUACG
- Length
- 49 nucleotides
- Bulged bases
- 6LQM|1|2|A|2093, 6LQM|1|2|U|2097, 6LQM|1|2|A|2253, 6LQM|1|2|C|2255, 6LQM|1|2|C|2258, 6LQM|1|2|G|2259, 6LQM|1|2|U|2267, 6LQM|1|2|C|2269
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQM|1|2|C|2087
6LQM|1|2|A|2088
6LQM|1|2|G|2089
6LQM|1|2|U|2090
6LQM|1|2|C|2091
6LQM|1|2|G|2092
6LQM|1|2|A|2093
6LQM|1|2|G|2094
6LQM|1|2|A|2095
6LQM|1|2|G|2096
6LQM|1|2|U|2097
6LQM|1|2|G|2098
6LQM|1|2|G|2099
6LQM|1|2|A|2100
6LQM|1|2|C|2101
6LQM|1|2|G|2102
6LQM|1|2|G|2103
6LQM|1|2|G|2104
6LQM|1|2|A|2105
6LQM|1|2|G|2106
6LQM|1|2|C|2107
6LQM|1|2|G|2108
6LQM|1|2|G|2109
6LQM|1|2|C|2110
6LQM|1|2|G|2111
6LQM|1|2|G|2112
6LQM|1|2|C|2113
6LQM|1|2|C|2249
6LQM|1|2|C|2250
6LQM|1|2|G|2251
6LQM|1|2|G|2252
6LQM|1|2|A|2253
6LQM|1|2|G|2254
6LQM|1|2|C|2255
6LQM|1|2|C|2256
6LQM|1|2|C|2257
6LQM|1|2|C|2258
6LQM|1|2|G|2259
6LQM|1|2|C|2260
6LQM|1|2|G|2261
6LQM|1|2|G|2262
6LQM|1|2|A|2263
6LQM|1|2|C|2264
6LQM|1|2|G|2265
6LQM|1|2|C|2266
6LQM|1|2|U|2267
6LQM|1|2|A|2268
6LQM|1|2|C|2269
6LQM|1|2|G|2270
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L29
- Chain D
- 60S ribosomal protein L4
- Chain Z
- 60S ribosomal protein L18
- Chain l
- 60S ribosomal protein L28
- Chain v
- 60S ribosomal protein L6
- Chain w
- 60S ribosomal protein L7
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