HL_6LQM_034

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

6LQM|1|2|G|2421, 6LQM|1|2|A|2423, 6LQM|1|2|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_034 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1765

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6LQM|1|2|A|2420
6LQM|1|2|G|2421
6LQM|1|2|OMC|2422
6LQM|1|2|A|2423
6LQM|1|2|OMG|2424
6LQM|1|2|U|2425
6LQM|1|2|U|2426

Current chains

Chain 2

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L39

Chain Y

60S ribosomal protein L17

Chain a

60S ribosomal protein L19