HL_6LQM_040

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6LQM|1|2|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_040 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2267

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6LQM|1|2|G|2624
6LQM|1|2|U|2625
6LQM|1|2|U|2626
6LQM|1|2|C|2627
6LQM|1|2|U|2628
6LQM|1|2|C|2629
6LQM|1|2|U|2630
6LQM|1|2|U|2631
6LQM|1|2|U|2632

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 0

Zinc finger protein 622

Chain a

60S ribosomal protein L19

Chain d

60S ribosomal protein L22