HL_6LQM_051

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

G(A2M)AGAAA(PSU)UC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_051 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3529

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6LQM|1|2|G|3722
6LQM|1|2|A2M|3723
6LQM|1|2|A|3724
6LQM|1|2|G|3725
6LQM|1|2|A|3726
6LQM|1|2|A|3727
6LQM|1|2|A|3728
6LQM|1|2|PSU|3729
6LQM|1|2|U|3730
6LQM|1|2|C|3731

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain W

60S ribosomal protein L36a