HL_6LQM_065

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUG(PSU)UCA

Length

7 nucleotides

Bulged bases

6LQM|1|2|G|4499

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_065 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.3256

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6LQM|1|2|U|4497
6LQM|1|2|U|4498
6LQM|1|2|G|4499
6LQM|1|2|PSU|4500
6LQM|1|2|U|4501
6LQM|1|2|C|4502
6LQM|1|2|A|4503

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain B

60S ribosomal protein L3