HL_6LQM_069

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CU(B8K)AACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6LQM|1|2|G|4694, 6LQM|1|2|C|4698

QA status

Modified nucleotides: B8K

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0951

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6LQM|1|2|C|4688
6LQM|1|2|U|4689
6LQM|1|2|B8K|4690
6LQM|1|2|A|4691
6LQM|1|2|A|4692
6LQM|1|2|C|4693
6LQM|1|2|G|4694
6LQM|1|2|C|4695
6LQM|1|2|C|4696
6LQM|1|2|U|4697
6LQM|1|2|C|4698
6LQM|1|2|U|4699
6LQM|1|2|A|4700
6LQM|1|2|A|4701
6LQM|1|2|G|4702

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain R

Ubiquitin-60S ribosomal protein L40

Chain V

60S ribosomal protein L13a