HL_6LQM_072

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6LQM|1|2|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_072 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.089

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6LQM|1|2|G|4975
6LQM|1|2|U|4976
6LQM|1|2|A|4977
6LQM|1|2|G|4978
6LQM|1|2|A|4979
6LQM|1|2|C|4980
6LQM|1|2|G|4981
6LQM|1|2|A|4982
6LQM|1|2|C|4983

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain T

60S ribosomal protein L31

Chain Y

60S ribosomal protein L17