HL_6LQM_081

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGAAG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_081 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.1373

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6LQM|1|2|U|393
6LQM|1|2|G|394
6LQM|1|2|A|395
6LQM|1|2|A|396
6LQM|1|2|G|397
6LQM|1|2|A2M|398

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 0

Zinc finger protein 622

Chain Y

60S ribosomal protein L17