HL_6LQM_083

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAUGGCCUCCGUU

Length

13 nucleotides

Bulged bases

6LQM|1|2|G|2486, 6LQM|1|2|C|2488, 6LQM|1|2|C|2489, 6LQM|1|2|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|G|2483
6LQM|1|2|A|2484
6LQM|1|2|U|2485
6LQM|1|2|G|2486
6LQM|1|2|G|2487
6LQM|1|2|C|2488
6LQM|1|2|C|2489
6LQM|1|2|U|2490
6LQM|1|2|C|2491
6LQM|1|2|C|2492
6LQM|1|2|G|2493
6LQM|1|2|U|2494
6LQM|1|2|U|2495

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L23a