HL_6LQM_086

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

6LQM|1|2|G|1178, 6LQM|1|2|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|G|1171
6LQM|1|2|C|1172
6LQM|1|2|G|1173
6LQM|1|2|G|1174
6LQM|1|2|A|1175
6LQM|1|2|C|1176
6LQM|1|2|U|1177
6LQM|1|2|G|1178
6LQM|1|2|U|1179
6LQM|1|2|C|1180
6LQM|1|2|C|1181
6LQM|1|2|C|1182
6LQM|1|2|C|1183
6LQM|1|2|A|1184
6LQM|1|2|G|1185
6LQM|1|2|U|1186
6LQM|1|2|G|1187
6LQM|1|2|C|1188
6LQM|1|2|G|1189
6LQM|1|2|C|1190

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L10-like

Chain r

60S ribosomal protein L5