HL_6LSS_015

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGUCCCCA

Length

8 nucleotides

Bulged bases

6LSS|1|2|G|1178, 6LSS|1|2|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_015 not in the Motif Atlas

Geometric match to HL_6CZR_089

Geometric discrepancy: 0.345

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

6LSS|1|2|U|1177
6LSS|1|2|G|1178
6LSS|1|2|U|1179
6LSS|1|2|C|1180
6LSS|1|2|C|1181
6LSS|1|2|C|1182
6LSS|1|2|C|1183
6LSS|1|2|A|1184

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain r

60S ribosomal protein L5