HL_6LSS_017

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

C(OMG)UCUUG(1MA)AAC(A2M)CG

Length

14 nucleotides

Bulged bases

6LSS|1|2|C|1325

QA status

Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_017 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.098

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6LSS|1|2|C|1315
6LSS|1|2|OMG|1316
6LSS|1|2|U|1317
6LSS|1|2|C|1318
6LSS|1|2|U|1319
6LSS|1|2|U|1320
6LSS|1|2|G|1321
6LSS|1|2|1MA|1322
6LSS|1|2|A|1323
6LSS|1|2|A|1324
6LSS|1|2|C|1325
6LSS|1|2|A2M|1326
6LSS|1|2|C|1327
6LSS|1|2|G|1328

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain k

60S ribosomal protein L32