HL_6LSS_027
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- AAACUUU
- Length
- 7 nucleotides
- Bulged bases
- 6LSS|1|2|A|1788
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSS_027 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.1983
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6LSS|1|2|A|1737
6LSS|1|2|A|1738
6LSS|1|2|A|1788
6LSS|1|2|C|1789
6LSS|1|2|U|1790
6LSS|1|2|U|1791
6LSS|1|2|U|1792
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain R
- Translation machinery-associated protein 16
- Chain c
- 60S ribosomal protein L21
- Chain r
- 60S ribosomal protein L5
Coloring options: