HL_6LSS_029

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GG(UR3)AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_029 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.327

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6LSS|1|2|G|1864
6LSS|1|2|G|1865
6LSS|1|2|UR3|1866
6LSS|1|2|A|1867
6LSS|1|2|A|1868
6LSS|1|2|C|1870

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain R

Translation machinery-associated protein 16