HL_6LSS_032

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGCCCGGAGCCCCGCGGACGCUACG

Length

49 nucleotides

Bulged bases

6LSS|1|2|U|2097, 6LSS|1|2|G|2112, 6LSS|1|2|C|2113, 6LSS|1|2|C|2255, 6LSS|1|2|U|2267, 6LSS|1|2|C|2269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|C|2087
6LSS|1|2|A|2088
6LSS|1|2|G|2089
6LSS|1|2|U|2090
6LSS|1|2|C|2091
6LSS|1|2|G|2092
6LSS|1|2|A|2093
6LSS|1|2|G|2094
6LSS|1|2|A|2095
6LSS|1|2|G|2096
6LSS|1|2|U|2097
6LSS|1|2|G|2098
6LSS|1|2|G|2099
6LSS|1|2|A|2100
6LSS|1|2|C|2101
6LSS|1|2|G|2102
6LSS|1|2|G|2103
6LSS|1|2|G|2104
6LSS|1|2|A|2105
6LSS|1|2|G|2106
6LSS|1|2|C|2107
6LSS|1|2|G|2108
6LSS|1|2|G|2109
6LSS|1|2|C|2110
6LSS|1|2|G|2111
6LSS|1|2|G|2112
6LSS|1|2|C|2113
6LSS|1|2|C|2249
6LSS|1|2|C|2250
6LSS|1|2|G|2251
6LSS|1|2|G|2252
6LSS|1|2|A|2253
6LSS|1|2|G|2254
6LSS|1|2|C|2255
6LSS|1|2|C|2256
6LSS|1|2|C|2257
6LSS|1|2|C|2258
6LSS|1|2|G|2259
6LSS|1|2|C|2260
6LSS|1|2|G|2261
6LSS|1|2|G|2262
6LSS|1|2|A|2263
6LSS|1|2|C|2264
6LSS|1|2|G|2265
6LSS|1|2|C|2266
6LSS|1|2|U|2267
6LSS|1|2|A|2268
6LSS|1|2|C|2269
6LSS|1|2|G|2270

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain l

60S ribosomal protein L28

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7