HL_6LSS_035
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- AG(OMC)A(OMG)UU
- Length
- 7 nucleotides
- Bulged bases
- 6LSS|1|2|G|2421, 6LSS|1|2|A|2423, 6LSS|1|2|U|2425
- QA status
- Modified nucleotides: OMC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSS_035 not in the Motif Atlas
- Homologous match to HL_5TBW_032
- Geometric discrepancy: 0.2235
- The information below is about HL_5TBW_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6LSS|1|2|A|2420
6LSS|1|2|G|2421
6LSS|1|2|OMC|2422
6LSS|1|2|A|2423
6LSS|1|2|OMG|2424
6LSS|1|2|U|2425
6LSS|1|2|U|2426
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- Nucleolar GTP-binding protein 1
- Chain P
- 60S ribosomal protein L39
- Chain Y
- 60S ribosomal protein L17
- Chain a
- 60S ribosomal protein L19
Coloring options: