HL_6LSS_038

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6LSS|1|2|U|2530, 6LSS|1|2|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_038 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1023

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6LSS|1|2|G|2523
6LSS|1|2|U|2524
6LSS|1|2|U|2525
6LSS|1|2|C|2526
6LSS|1|2|A|2527
6LSS|1|2|G|2528
6LSS|1|2|A|2529
6LSS|1|2|U|2530
6LSS|1|2|C|2531
6LSS|1|2|C|2532

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19

Chain g

60S ribosomal protein L23a