HL_6LSS_053
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GGGAACG(P7G)GC
- Length
- 10 nucleotides
- Bulged bases
- 6LSS|1|2|A|3876, 6LSS|1|2|A|3877, 6LSS|1|2|C|3878, 6LSS|1|2|G|3881
- QA status
- Modified nucleotides: P7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSS_053 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.2509
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6LSS|1|2|G|3873
6LSS|1|2|G|3874
6LSS|1|2|G|3875
6LSS|1|2|A|3876
6LSS|1|2|A|3877
6LSS|1|2|C|3878
6LSS|1|2|G|3879
6LSS|1|2|P7G|3880
6LSS|1|2|G|3881
6LSS|1|2|C|3882
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain k
- 60S ribosomal protein L32
Coloring options: