HL_6LSS_054

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AGUUUUU

Length

7 nucleotides

Bulged bases

6LSS|1|2|U|4066, 6LSS|1|2|U|4067

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_054 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2114

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LSS|1|2|A|3943
6LSS|1|2|G|3944
6LSS|1|2|U|4066
6LSS|1|2|U|4067
6LSS|1|2|U|4068
6LSS|1|2|U|4069
6LSS|1|2|U|4070

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36