HL_6LSS_056

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6LSS|1|2|G|4195

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_056 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.374

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6LSS|1|2|C|4193
6LSS|1|2|I4U|4194
6LSS|1|2|G|4195
6LSS|1|2|OMG|4196
6LSS|1|2|G|4197
6LSS|1|2|G|4198
6LSS|1|2|C|4199
6LSS|1|2|G|4200
6LSS|1|2|G|4201

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29