HL_6LSS_079

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6LSS|1|8|U|124, 6LSS|1|8|C|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_079 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1502

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6LSS|1|8|G|121
6LSS|1|8|G|122
6LSS|1|8|U|123
6LSS|1|8|U|124
6LSS|1|8|C|125
6LSS|1|8|C|126
6LSS|1|8|U|127
6LSS|1|8|C|128
6LSS|1|8|C|129

Current chains

Chain 8

28S rRNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain g

60S ribosomal protein L23a